download the TREES toolbox for Matlab:
[download zipped package]
developer's site check out our Google Code project which gives you access to the SVN repository, a developers and user forum,
and a mailing listat:
http://code.google.com/p/treestoolbox/
optional Python wrapper written by Eilif Müller. Check out his project site.
requirements Tested on most recent versions of Matlab
(Matlab 2009a)
under Windows, Mac and Linux.
Some functions for the reconstruction of neuronal trees from image stacks
require the "image processing toolbox" of Matlab.
For semi-automated reconstruction we recommend following minimal hardware:
- a lot of RAM, e.g. 8 Gbytes
- 64 bit
- a mouse wheel
(The TREES toolbox was developed on a DELL precision T5400 with 8 cores
(2 x Xeon X5450 3 Ghz 4 cores),
8 Gbytes of RAM and a NVIDIA Quadro FX 4600 graphic card,
running 64-bit Microsoft Windows 7.)
getting started Simply download TREES.zip, unzip it in your favourite directory and open Matlab. Enter the TREES directory and type in:
>> start_trees
for more details have a look at the manual.
contact please send emails concerning questions, bug-fixes and extensions including example code only to the following addresses: info@treestoolbox.org and bugtracker@treestoolbox.org
license the TREES toolbox is published under the GNU General Public License Version 3 (GPLv3)
disclaimer Please note that this is a beta version and that we are aware that many bugs will be uncovered after making the TREES toolbox public. Unfortunately we do not possess the capacities to respond to all requests and questions sent to us. Please note also that subsequent releases will not be backward compatible.
This work is licensed under a
Creative Commons Attribution-Noncommercial-Share Alike 3.0 License